PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048129m
Common NameCISIN_1g048129mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 412aa    MW: 46812.9 Da    PI: 7.1393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048129mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.86.7e-85444121373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsev 87 
                        lv+lL+ cAe + s+++ +a++lL + ++ +s+ g++++R+++yf++AL++r +r +++ ++k ++ +e +  + +e++ +l+      ++ 
  orange1.1g048129m  44 LVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNReTGKITSKRVKGEEIQLLQPEETILSLRPalvaCYKE 135
                        689****************************************************4445555555666665555555555554345565666 PP

               GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                        s +++ + ++  qaI e v++++r+H iD+ i  G + + L+qaLa+R+e p   l+iT+vgs   +sk+++eetg+rLa fAe+ ++pf+f
  orange1.1g048129m 136 SSFYQATLFAGTQAIIERVASAKRIHLIDLAIRSGSHCIVLMQALATRQECPVeLLKITAVGS---SSKQRMEETGKRLAYFAETWNLPFSF 224
                        679999*******************************************7665499*******...58************************ PP

               GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        +++++++++dl+ ++++++ gEa+aV + + l r+         + d ++k+++++sP v+v++e ea+hns++F +rf+e l +ysa fd+
  orange1.1g048129m 225 KIVLVTETKDLNEDKFDLNAGEAVAVYSPILLSRTR--------HPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDC 308
                        ******************************888886........457899****************************************** PP

               GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                        l+++++r + er++ E+++lg++i+n++a+eg+er+ rh +   Wr+ ++++G+ +++ls++   qa+l++++++     +++ + ++l+ g
  orange1.1g048129m 309 LKVSMARCDPERVTFEEMYLGQHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAELVIKNFAfASYLTLDRNGQCLIVG 400
                        ***************************************************************************555568888899999** PP

               GRAS 362 WkdrpLvsvSaW 373
                        Wk+ p +s+S+W
  orange1.1g048129m 401 WKGSPQLSLSVW 412
                        ************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.76718392IPR005202Transcription factor GRAS
PfamPF035142.3E-8244412IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
VIRAATAIYL QSSSHSSSNL SLLYHFCGGS AINISEEESK DVELVHLLIL CAEKIGSQQF  60
DRASTLLDHC ENFSSKIGNS VERVVHYFVK ALQERFNRET GKITSKRVKG EEIQLLQPEE  120
TILSLRPALV ACYKESSFYQ ATLFAGTQAI IERVASAKRI HLIDLAIRSG SHCIVLMQAL  180
ATRQECPVEL LKITAVGSSS KQRMEETGKR LAYFAETWNL PFSFKIVLVT ETKDLNEDKF  240
DLNAGEAVAV YSPILLSRTR HPDFLIKMLR KISPCVMVII EVEANHNSQN FEDRFFEVLF  300
HYSASFDCLK VSMARCDPER VTFEEMYLGQ HIRNIIATEG EERIFRHMKI DAWRKFFHRF  360
GMVEAELSTS SLFQAELVIK NFAFASYLTL DRNGQCLIVG WKGSPQLSLS VW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-327441233374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419399.10.0hypothetical protein CICLE_v10006766mg
TrEMBLA0A067G9310.0A0A067G931_CITSI; Uncharacterized protein (Fragment)
STRINGPOPTR_0010s15330.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2004936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-53RGA-like 1